PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8408g0030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 793aa    MW: 87709.2 Da    PI: 9.0365
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8408g0030genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07277298527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   +C +f++ G C++G++C++ H++
  MA_8408g0030 277 PCYDFSK-GRCHRGSSCRYLHSE 298
                   8******.*************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.572272299IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4272298IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4277298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4277298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774371398IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032371397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MAVDLASEMV IFAEKKSGPN FGNDDIECRK LEAVNPCNDG KSFKEGSHSN NSDQHISLNN  60
NISSEVANMK PNITLGPDNV KSEMQVRLKP DNKAMKTDRY GRIIREGNSD SESDGGPHAA  120
RGRAGPSQSR SPSPSHSRWR KRTYSRSPRR KTRWSSSRSR SPKRRRSRSR TPVYDFRRGG  180
DARGERINRG TSGGGVMQGP SGDSVSRWAG GGRGRERIEN RQDVAKSVGG KESFLSGELD  240
KTRSISPDRF PDEHESHYYV ERRNQESYGY NDRSATPCYD FSKGRCHRGS SCRYLHSETV  300
PDTVGRWSSV GKSRERTENR QDITKPFCGT DGFGSVEVDK TRNFSPNRLH NQHYRHNSRD  360
KRSHEIDRRN DRSVPACIFF ARGCCLKGLS CRFFHPDAPG NNDSGRGRER PESRSDITEP  420
FGGKGSSAAV EMDRNKNFFL ERSSYGHDRR DPFKGHRQET EKHNYSSANP VVKTQFSTPG  480
TEKLQSHREE LWSQTQSTDA PSQTNRRENV GGHLMPRDLP SQSLSWEKFD AESSEGPSAP  540
SVTDKIQPHN PGEDIQQPLQ SHDLQFQTEN LHSKNDLNST PFLSLPGDLP ALLDHCVTGH  600
SLLSGQSLGS ERVPLQLHDG WKGSSPAQSN VESNVVSLPA GFSTNSSIIK PPAEHSGIGG  660
CSMSYHQTSI MPNLNSVPQP GFVHGTTVQE VDYCANDFTT HVATASTEQR SVCAQPSLEL  720
VNLRHASSTG QESLMPRLIT MPLFPPQNQS GGQIGSVPLA LFAEQKAFAC SQTGVPFTPG  780
LSTANQASKD IPX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165RRKTRWSSSRSRSPKRRR